Command-line help is now generated at build time so it does not need to be committed. This reduces churn on commits that add configuration and/or update the help.
Since churn is no longer an issue, help.auto.c is bzip2 compressed to save space in the binary.
The Perl config parser (Data.pm) has been moved to doc/lib since the Perl build path is no longer required.
Likewise doc/xml/reference.xml has been moved to src/build/help/help.xml since it is required at build time.