diff --git a/e2e/docker-compose.yml b/e2e/docker-compose.yml
index d8804445d2..fb02aff2ff 100644
--- a/e2e/docker-compose.yml
+++ b/e2e/docker-compose.yml
@@ -4,6 +4,7 @@ name: immich-e2e
 
 x-server-build: &server-common
   image: immich-server:latest
+  container_name: immich-e2e-server
   build:
     context: ../
     dockerfile: server/Dockerfile
diff --git a/e2e/src/api/specs/audit.e2e-spec.ts b/e2e/src/api/specs/audit.e2e-spec.ts
new file mode 100644
index 0000000000..073106e728
--- /dev/null
+++ b/e2e/src/api/specs/audit.e2e-spec.ts
@@ -0,0 +1,51 @@
+import {
+  deleteAssets,
+  getAuditFiles,
+  updateAsset,
+  type LoginResponseDto,
+} from '@immich/sdk';
+import { apiUtils, asBearerAuth, dbUtils, fileUtils } from 'src/utils';
+import { beforeAll, describe, expect, it } from 'vitest';
+
+describe('/audit', () => {
+  let admin: LoginResponseDto;
+
+  beforeAll(async () => {
+    apiUtils.setup();
+    await dbUtils.reset();
+    await fileUtils.reset();
+
+    admin = await apiUtils.adminSetup();
+  });
+
+  describe('GET :/file-report', () => {
+    it('excludes assets without issues from report', async () => {
+      const [trashedAsset, archivedAsset, _] = await Promise.all([
+        apiUtils.createAsset(admin.accessToken),
+        apiUtils.createAsset(admin.accessToken),
+        apiUtils.createAsset(admin.accessToken),
+      ]);
+
+      await Promise.all([
+        deleteAssets(
+          { assetBulkDeleteDto: { ids: [trashedAsset.id] } },
+          { headers: asBearerAuth(admin.accessToken) }
+        ),
+        updateAsset(
+          {
+            id: archivedAsset.id,
+            updateAssetDto: { isArchived: true },
+          },
+          { headers: asBearerAuth(admin.accessToken) }
+        ),
+      ]);
+
+      const body = await getAuditFiles({
+        headers: asBearerAuth(admin.accessToken),
+      });
+
+      expect(body.orphans).toHaveLength(0);
+      expect(body.extras).toHaveLength(0);
+    });
+  });
+});
diff --git a/e2e/src/utils.ts b/e2e/src/utils.ts
index a6374aff52..fbc0b43b31 100644
--- a/e2e/src/utils.ts
+++ b/e2e/src/utils.ts
@@ -17,14 +17,17 @@ import {
   updatePerson,
 } from '@immich/sdk';
 import { BrowserContext } from '@playwright/test';
-import { spawn } from 'child_process';
+import { exec, spawn } from 'child_process';
 import { randomBytes } from 'node:crypto';
 import { access } from 'node:fs/promises';
 import path from 'node:path';
+import { promisify } from 'node:util';
 import pg from 'pg';
 import { loginDto, signupDto } from 'src/fixtures';
 import request from 'supertest';
 
+const execPromise = promisify(exec);
+
 export const app = 'http://127.0.0.1:2283/api';
 
 const directoryExists = (directory: string) =>
@@ -35,6 +38,9 @@ const directoryExists = (directory: string) =>
 // TODO move test assets into e2e/assets
 export const testAssetDir = path.resolve(`./../server/test/assets/`);
 
+const serverContainerName = 'immich-e2e-server';
+const uploadMediaDir = '/usr/src/app/upload/upload';
+
 if (!(await directoryExists(`${testAssetDir}/albums`))) {
   throw new Error(
     `Test assets not found. Please checkout https://github.com/immich-app/test-assets into ${testAssetDir} before testing`
@@ -50,6 +56,14 @@ export const asKeyAuth = (key: string) => ({ 'x-api-key': key });
 
 let client: pg.Client | null = null;
 
+export const fileUtils = {
+  reset: async () => {
+    await execPromise(
+      `docker exec -i "${serverContainerName}" rm -R "${uploadMediaDir}"`
+    );
+  },
+};
+
 export const dbUtils = {
   createFace: async ({
     assetId,
diff --git a/server/src/domain/audit/audit.service.ts b/server/src/domain/audit/audit.service.ts
index 887b72e2cd..a7c003fad6 100644
--- a/server/src/domain/audit/audit.service.ts
+++ b/server/src/domain/audit/audit.service.ts
@@ -167,7 +167,7 @@ export class AuditService {
       `Found ${libraryFiles.size} original files, ${thumbFiles.size} thumbnails, ${videoFiles.size} encoded videos, ${profileFiles.size} profile files`,
     );
     const pagination = usePagination(JOBS_ASSET_PAGINATION_SIZE, (options) =>
-      this.assetRepository.getAll(options, { withDeleted: true }),
+      this.assetRepository.getAll(options, { withDeleted: true, withArchived: true }),
     );
 
     let assetCount = 0;